ilastik
=======

ilastik is a free open-source interactive learning and segmentation toolkit, with which can be used to leverage machine learning algorithms to easily segment, classify, track and count cells or other experimental data. For more details go to see \ https://www.ilastik.org/\.
We will show how to analyze data stored in OMERO, using the ilastik user interface, Fiji and the OMERO ImageJ plugin. We will then also show how to analyze images using the ilastik API and OMERO.py API.

Contents:

.. toctree::
   setup
   gettingstarted
   ilastik_parallel
   ilastik_fiji
   ilastik_fiji_script
   ilastik_tracking
   :maxdepth: 1

Contribute
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Changes to the documentation or the materials should be made directly in the `omero-guide-ilastik repository <https://github.com/ome/omero-guide-ilastik>`_.