Installing rOMERO-gateway

rOMERO-gateway will use rJava to communicate with an OMERO server.

Install in a Conda environment

In this section, we show how to install rOMERO-gateway and additional packages for image analysis (see environment.yml and postBuild) in a Conda environment.

Install Miniconda if necessary.
If you do not have a local copy of the omero-guide-r repository, first clone the repository:
```
$ git clone https://github.com/ome/omero-guide-r.git
```
Go into the directory:
```
$ cd omero-guide-r
```
Create a programming environment using Conda:
```
$ conda create -n rgateway
```
Install dependencies and some packages used in the notebooks using an installation file:
```
$ conda env update -n rgateway --file binder/environment.yml
```
Run a bash script to install rOMERO-gateway and the Java dependencies:
```
$ bash binder/postBuild
```
Activate the environment:
```
$ conda activate rgateway
```

Install in RStudio

See Installing and using romero.gateway package in RStudio