The OMERO guide is divided into several parts:

General concepts covers how to get started, import, manage data and run server-side OMERO scripts.

Add-ons for OMERO includes instructions for installing Web and Command Line Interface plugins and how to use those extensions points e.g. OMERO.figure, OMERO.parade.

OMERO Application Programming Interfaces allows clients to be written in Java, Python, R, C++ or MATLAB. This section includes installation instructions and an exhaustive list of examples.

External Software and OMERO introduces how to analyze data using third party tools e.g. Fiji, CellProfiler, ilastik.

All the guides are hosted on GitHub. If you wish to create a new guide, check the instructions on How to write a guide.

Click on the icon to go the relevant part of the guide.

fiji ilastik cellprofiler trackmate orbit qupath

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