Fiji
Fiji is a popular free open-source image processing package based on ImageJ, https://imagej.net/Fiji. We demonstrate how to use Fiji User Interface and OMERO and we also demonstrate how to analyze data in OMERO using Fiji scripting facility.
Install the plugins
Manual Analysis
Automated Analysis
Fiji and Zarr
Contribute
Changes to the documentation or the materials should be made directly in the omero-guide-fiji repository.